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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4785189_4788205_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4785189 - 4788205
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATTTTACT
Flanking Amino Acid:
FRIYPWMRSTGTDRKRGRQT
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.8
0.78
0.8
77.2
36.7
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
52.7
0.16
1.9
73.64
43

Associated Gene:

Gene:
HOXB7
Ensembl Gene ID:
ENSAPLG00000013643
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014209
4783296 - 4788459
5164