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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4799174_4800461_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4799174 - 4800461

Intron Length:

1288

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTGAGTTTA

5'SS Class:

major

3'SS Sequence:

GCGGGTGTCACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTT

Flanking Amino Acid:

PWMQRMNSCNSSSFGPSGRR

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

0.9

75.6

29.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

57.3

0.17

1.1

48.4

43.9

Minor 5ss

40.2

-1.1

2.9

50.7

41.2

Minor BPS

70.5

0.72

1.5

86.8

33.5

Associated Gene:

Gene:

HOXB6

Ensembl Gene ID:

ENSAPLG00000013649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014218

4798587 - 4801493

2907