About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4811156_4813232_R

Intron Information:

Intron Rank:
147035
Intron Class:
major
Intron Phase:
Intron Coordinates:
4811156 - 4813232
Intron Length:
2077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGAGCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
63.8
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.8
0.87
0.7
85.4
28.5
Minor 5ss
29
-2.4
3.3
41.6
44.4
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026397
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036213
4810548 - 4816520
5973