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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4813320_4816378_R

Intron Information:

Intron Rank:
147036
Intron Class:
major
Intron Phase:
Intron Coordinates:
4813320 - 4816378
Intron Length:
3059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.6
83.8
24.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
54.4
0.12
1.8
66.71
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026397
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036213
4810548 - 4816520
5973