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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4822753_4826398_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4822753 - 4826398

Intron Length:

3646

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTACT

5'SS Class:

strong_major

3'SS Sequence:

CGGAATATTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

TTCCCAATCACT

Flanking Amino Acid:

YSEERPHVWPSSQRRESTFQ

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.4

33.5

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

63.2

0.3

1.1

44.4

Minor 5ss

-1.5

3.1

51.8

44.8

Minor BPS

46.3

-0.2

2.3

71.76

44.5

Associated Gene:

Gene:

HOXB4

Ensembl Gene ID:

ENSAPLG00000013669

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038508

4822334 - 4828178

5845