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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4826177_4826279_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4826177 - 4826279

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTAGG

5'SS Class:

major

3'SS Sequence:

GTGCAATTCTAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATATAT

U12 Branch Point Sequence:

ATATATATATTT

Flanking Amino Acid:

HMDSNFVHLTKLMAMSSFLI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.1

66.8

44.5

Major BPS

71.4

0.53

67.3

39.3

Major PPT

55.2

0.12

1.1

56.8

42.4

Minor 5ss

37.3

-1.4

2.7

48.1

41.6

Minor BPS

45.6

-0.2

1.9

65.18

39.4

Associated Gene:

Gene:

HOXB4

Ensembl Gene ID:

ENSAPLG00000013669

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014236

4825677 - 4828178

2502