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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4826707_4827492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4826707 - 4827492

Intron Length:

786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTTTTTTCCT

Flanking Amino Acid:

PWMKKVHVSTVNPNYSGGEP

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

78.7

0.65

76.9

42.1

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

HOXB4

Ensembl Gene ID:

ENSAPLG00000013669

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038508

4822334 - 4828178

5845

ENSAPLT00000014236

4825677 - 4828178

2502