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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4844900_4850314_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4844900 - 4850314

Intron Length:

5415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CCTAACCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

TTTCTCCTAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

85.7

25.5

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

74.4

0.55

0.9

69.5

36.4

Minor 5ss

40.8

-1

43.6

Minor BPS

67.8

0.54

1.7

80.63

33.4

Associated Gene:

Gene:

HOXB3

Ensembl Gene ID:

ENSAPLG00000018688

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048423

4844840 - 4854358

9519