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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4850869_4851933_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4850869 - 4851933
Intron Length:
1065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTGT
5'SS Class:
major
3'SS Sequence:
TCGCGGCCAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
SKQKNTSPSTETCSGEKSPP
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.2
43.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
58.1
0.18
1
51.3
38
Minor 5ss
43.9
-0.7
3.3
65.1
46.1
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
HOXB3
Ensembl Gene ID:
ENSAPLG00000018688
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048423
4844840 - 4854358
9519