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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4857636_4857758_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4857636 - 4857758

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCTCCATCC

5'SS Class:

weak_major

3'SS Sequence:

TGAAATCGGAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

GTTTGCTGAAAT

Flanking Amino Acid:

EKKSSKKATQDSNDEQSPPS

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.19

1.4

50.8

44.3

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

42.2

-0.4

1.7

38.6

44.1

Minor 5ss

29.7

-2.3

43.8

43.4

Minor BPS

57.1

0.3

79.39

Associated Gene:

Gene:

HOXB2

Ensembl Gene ID:

ENSAPLG00000022580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031080

4857324 - 4868499

11176