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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4871201_4871928_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4871201 - 4871928

Intron Length:

728

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTCGTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGCT

U12 Branch Point Sequence:

TTGCTCGTTACA

Flanking Amino Acid:

MKVKRNPPKTAKVSEYGLLG

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

38.1

-0.7

4.3

71.4

45.1

Major PPT

78.6

0.64

0.9

72.3

37.9

Minor 5ss

28.9

-2.4

3.3

37.6

47.1

Minor BPS

46.8

-0.2

2.3

64.02

42.2

Associated Gene:

Gene:

HOXB1

Ensembl Gene ID:

ENSAPLG00000018179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043682

4870501 - 4872848

2348