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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4872173_4872457_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4872173 - 4872457
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGAA
5'SS Class:
major
3'SS Sequence:
TCTTAATTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTCTCTTAATT
Flanking Amino Acid:
KEGLAPAAASRPSVKRWTPK
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.5
38.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.1
0.66
0.8
73.3
35.9
Minor 5ss
31.1
-2.2
3.2
38.1
46.8
Minor BPS
76.3
0.9
1.1
84.73
36.1

Associated Gene:

Gene:
HOXB1
Ensembl Gene ID:
ENSAPLG00000018179
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043682
4870501 - 4872848
2348