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Intron Name: Anas_platyrhynchos_platyrhynchos_28_5040537_5042393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5040537 - 5042393

Intron Length:

1857

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTAAT

U12 Branch Point Sequence:

AGTTACAGACCC

Flanking Amino Acid:

RTFFYYANEKSKQPKGTFSI

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

26.3

Major BPS

58.9

0.22

1.4

61.7

43.1

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

36.1

-1.6

3.3

49.4

41.3

Minor BPS

43.1

-0.5

57.05

40.6

Associated Gene:

Gene:

SKAP1

Ensembl Gene ID:

ENSAPLG00000007983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008287

4928465 - 5045546

117082