About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_5043336_5044364_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5043336 - 5044364
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACCA
Flanking Amino Acid:
WVDQIQFLMKDLSSLTIPYD
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.65
0.8
73.3
31.7
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
51.8
0.05
1.8
66.33
40.9

Associated Gene:

Gene:
SKAP1
Ensembl Gene ID:
ENSAPLG00000007983
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008287
4928465 - 5045546
117082