Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_5044521_5045298_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5044521 - 5045298

Intron Length:

778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTAAATGCACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

AATATATTAAAT

Flanking Amino Acid:

EEDDVYEVFPEIFMVPKIFV

Intron Amino Acid Position:

256

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

36.6

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

60.8

0.24

1.1

52.2

46.4

Minor 5ss

45.8

-0.4

2.6

59.7

45.1

Minor BPS

53.3

0.18

1.7

71.14

38.7

Associated Gene:

Gene:

SKAP1

Ensembl Gene ID:

ENSAPLG00000007983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008287

4928465 - 5045546

117082