About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_545024_559542_R

Intron Information:

Intron Rank:
136174
Intron Class:
major
Intron Phase:
Intron Coordinates:
545024 - 559542
Intron Length:
14519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.9
73.9
40.3
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
49.4
0.04
2
77.42
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020691
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038164
540641 - 559602
18962