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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_594409_595389_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
594409 - 595389
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAA
U12 Branch Point Sequence:
CTTGCTTGAAGA
Flanking Amino Acid:
LYGPDNHLVEWHRLPTTQET
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
56.9
0.17
1.3
51.3
44.2
Major PPT
78
0.63
0.8
72.7
32.1
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
49.7
-0
1.9
63.35
43.5

Associated Gene:

Gene:
SMARCD2
Ensembl Gene ID:
ENSAPLG00000009500
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009940
591483 - 598411
6929