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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_595492_595780_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
595492 - 595780
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTCTCTCTAATC
Flanking Amino Acid:
CTLLLMLDHQPPQYKLDPRL
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
73.8
0.53
0.9
66.1
35.9
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
58
0.23
1.7
66.2
40.3

Associated Gene:

Gene:
SMARCD2
Ensembl Gene ID:
ENSAPLG00000009500
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009940
591483 - 598411
6929