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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_596300_596574_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
596300 - 596574
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
TGCCTCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAC
U12 Branch Point Sequence:
CCCGCCCCAACA
Flanking Amino Acid:
PDPIIINHTISVDPNDQKKT
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
51.2
0.03
0.9
58.7
27.5
Major PPT
74
0.54
0.8
65.2
36.2
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
44.9
-0.3
2
51.63
46.1

Associated Gene:

Gene:
SMARCD2
Ensembl Gene ID:
ENSAPLG00000009500
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009940
591483 - 598411
6929