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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_596997_597085_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
596997 - 597085
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGGTGCTCACCC
Flanking Amino Acid:
WIKSQRRDLKIITDVIGNPE
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.4
26.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.8
0.58
0.9
72.4
37.6
Minor 5ss
45.6
-0.5
3.1
65.7
39.5
Minor BPS
43
-0.5
2.2
50.79
46

Associated Gene:

Gene:
SMARCD2
Ensembl Gene ID:
ENSAPLG00000009500
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009940
591483 - 598411
6929