Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_606399_606629_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

606399 - 606629

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAACC

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACACAA

U12 Branch Point Sequence:

GCTAACACAAGT

Flanking Amino Acid:

EDITTEKCRQALRKELQTWK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

77.7

30.1

Major BPS

51.9

0.05

0.9

27.3

Major PPT

78.4

0.64

0.8

76.2

32.4

Minor 5ss

29.3

-2.4

2.8

35.3

40.9

Minor BPS

39.9

-0.6

2.1

56.07

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010830

605784 - 612334

6551