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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_606730_606858_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
606730 - 606858
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGCCC
5'SS Class:
major
3'SS Sequence:
TCCACCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TTCTTCTCCACC
Flanking Amino Acid:
ASWVHDAYSQANLTLMALKL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
58.9
37
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
71.2
0.48
0.8
65
30.5
Minor 5ss
25.2
-2.9
3.3
33
42.3
Minor BPS
53.9
0.11
2
69.77
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010830
605784 - 612334
6551