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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_610424_610523_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
610424 - 610523
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
AAGACCCTAAGC
Flanking Amino Acid:
DDDDSSSDEERPPTPVERKR
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
79
0.72
1
69
38.9
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47
-0.2
2
55.75
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010830
605784 - 612334
6551