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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_611181_611260_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
611181 - 611260
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGCTGTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTGTCCCTGACC
Flanking Amino Acid:
AEAKARKKRRMLKKMEQMKK
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71
0.47
0.9
61.8
40
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
68.5
0.57
1.7
78.82
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010362
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010830
605784 - 612334
6551