Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_611356_611649_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

611356 - 611649

Intron Length:

294

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

GTCTGTTTCACT

Flanking Amino Acid:

SEREKVAQLRRIYKKAGLGK

Intron Amino Acid Position:

706

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

72.6

38.9

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

81.8

0.72

0.7

76.4

25.8

Minor 5ss

29.4

-2.4

3.2

40.9

45.4

Minor BPS

49.7

0.06

2.2

71.8

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010830

605784 - 612334

6551