Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_617557_627335_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

617557 - 627335

Intron Length:

9779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

CACCACCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TGTCCCACCACC

Flanking Amino Acid:

GTWLWELVPVGEEGSAEVPV

Intron Amino Acid Position:

669

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.9

77.9

38.6

Major BPS

83.8

0.84

73.6

41.8

Major PPT

62.3

0.28

0.9

54.1

30.1

Minor 5ss

34.6

-1.7

2.7

34.2

41.4

Minor BPS

45.4

-0.3

2.2

62.44

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010630

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007474

613056 - 634447

21392