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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_617861_618103_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
617861 - 618103
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGCGTC
5'SS Class:
major
3'SS Sequence:
CTGCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
CGGACCCTAATT
Flanking Amino Acid:
TPIVGSMGPPGEVLLSSAHP
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.4
65.2
40.6
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
73.9
0.54
0.8
65.7
36
Minor 5ss
34.9
-1.7
3.6
49.7
46.9
Minor BPS
51.9
0.14
1.8
66.18
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011197
613056 - 624191
11136