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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_618207_618424_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
618207 - 618424
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTCATTT
Flanking Amino Acid:
FQVDAYKLFQDAALKLLTNA
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.7
84
30.8
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
47.2
-0.1
1.7
62.54
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011197
613056 - 624191
11136