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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_618623_618840_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
618623 - 618840
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTGCCTTATAT
Flanking Amino Acid:
KPEAELSMEEIYKVLPNFDS
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.5
0.71
0.9
73.7
40.8
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
59.7
0.38
1.8
78.13
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011197
613056 - 624191
11136