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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_621600_621712_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
621600 - 621712
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCACCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGCCCTCCACC
Flanking Amino Acid:
DEKFLVEICGRYTYGKPVQG
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
64.8
0.33
0.9
58.4
31.4
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
48.3
-0.1
2
59.89
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011197
613056 - 624191
11136