Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_623740_624117_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

623740 - 624117

Intron Length:

378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGCACT

5'SS Class:

major

3'SS Sequence:

TTCTCCTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

ATGCCCTTGATG

Flanking Amino Acid:

LHLTAGGSAALHYVVTSPAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

68.7

Major BPS

71.5

0.53

1.1

43.2

Major PPT

78.3

0.64

0.9

72.8

37.4

Minor 5ss

44.9

-0.5

2.9

69.2

40.9

Minor BPS

63.1

0.27

1.4

62.16

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010630

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011197

613056 - 624191

11136