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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_629389_629623_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
629389 - 629623
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTCTT
5'SS Class:
major
3'SS Sequence:
TCCTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCCTTCCCATCT
Flanking Amino Acid:
ELQSVDVVFLVMARDTIVSL
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
70.5
41.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
85.1
0.79
0.7
79.9
25.4
Minor 5ss
33.5
-1.9
3.4
46
43.6
Minor BPS
42
-0.5
2
55.75
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007474
613056 - 634447
21392