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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_630275_631386_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
630275 - 631386
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGCCAC
U12 Branch Point Sequence:
TGCCACCTAGCG
Flanking Amino Acid:
ANAILTERRTGNLHSLTKSC
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
39.6
Major BPS
43.9
-0.3
1.4
49.9
45.3
Major PPT
81.9
0.72
0.7
76.4
25.6
Minor 5ss
37.1
-1.5
3.3
48.7
47
Minor BPS
42.2
-0.7
2
47.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007474
613056 - 634447
21392