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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_632005_632077_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
632005 - 632077
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCATCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TCCTGCTCCATC
Flanking Amino Acid:
DEMIPLHVCGWYPSGKPFRG
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.5
40.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
71.6
0.49
0.8
64.7
30.8
Minor 5ss
34.3
-1.8
2.8
37.3
42.5
Minor BPS
43.1
-0.5
2.3
53.52
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007474
613056 - 634447
21392