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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_633215_633322_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
633215 - 633322
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTGCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TAGCACTCACTC
Flanking Amino Acid:
DKTTYKPGQTVKFRILRLEE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
64.9
0.37
1
67
29.8
Major PPT
84.8
0.78
0.8
77
37.2
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
43.1
-0.5
1.9
50.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010630
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007474
613056 - 634447
21392