Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_637517_642622_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

637517 - 642622

Intron Length:

5106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TCCTCTGCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

CTGTGTTGATCT

Flanking Amino Acid:

YQDTAVEDGEPLLRAAIRPL

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.3

78.2

37.9

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

68.6

0.42

0.8

61.3

35.1

Minor 5ss

38.1

-1.3

41.5

Minor BPS

45.4

-0.2

2.1

63.92

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039409

635005 - 645687

10683

ENSAPLT00000025362

635005 - 645952

10948