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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_666847_668925_F

Intron Information:

Intron Rank:
130865
Intron Class:
major
Intron Phase:
Intron Coordinates:
666847 - 668925
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GCTCTGCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
64.9
0.34
1
58.3
37.3
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
39.1
-0.8
2.3
50.19
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020277
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020423
665737 - 678339
12603