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Intron Name: Anas_platyrhynchos_platyrhynchos_28_683579_684398_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

683579 - 684398

Intron Length:

820

Sequence Information:

Terminal Dinucleotides:

AT-AA

5'SS Sequence:

TTC|ATATCCTTG

5'SS Class:

strong_minor

3'SS Sequence:

GACCAGGTTTTAA|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

CCTTGAC

U12 Branch Point Sequence:

TTCTCCTTGACC

Flanking Amino Acid:

RRGAIKVLIHSLFSMFIMIT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

28.1

-1.3

3.3

36.8

42.9

Major BPS

61.6

0.29

1.1

54.6

40.8

Major PPT

34.8

-0.8

3.1

42.5

42.6

Minor 5ss

86.3

1.21

1.3

81.6

32.9

Minor BPS

84.3

1.06

85.95

32.4

Associated Gene:

Gene:

SCN4A

Ensembl Gene ID:

ENSAPLG00000004906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005205

683340 - 716182

32843