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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_684489_685108_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
684489 - 685108
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
ATTCCCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCATTCCCATTT
Flanking Amino Acid:
SNPPAWSKNVEYTFTGIYTF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
78.7
0.65
0.8
74.8
34
Minor 5ss
40.1
-1.1
3
50.3
40.1
Minor BPS
40.7
-0.6
1.9
52.84
42.7

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843