About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_685238_685358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
685238 - 685358
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
TTGCATCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCCTCTTGCATC
Flanking Amino Acid:
NWLDFMVISMAYITEFVDLG
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.3
56.7
42.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
79.6
0.67
0.9
73.4
36.7
Minor 5ss
28.5
-2.5
3
28.1
36.2
Minor BPS
47.9
-0.1
1.9
58.09
41.8

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843