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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_692536_692914_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
692536 - 692914
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
AGGGCCTGATGC
Flanking Amino Acid:
ALLCGNSSDAGKCPEGYECM
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
71.8
0.49
1
68.3
37.4
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
41.6
-0.6
2
46.12
42.6

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843