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Intron Name: Anas_platyrhynchos_platyrhynchos_28_694178_696140_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

694178 - 696140

Intron Length:

1963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTGGA

5'SS Class:

major

3'SS Sequence:

TGGGTGGCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGAGAT

U12 Branch Point Sequence:

GTGTGGGTGATG

Flanking Amino Acid:

KKHQEEQEKQLQDRRSSSGS

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.5

0.53

1.2

64.5

41.8

Major BPS

49.5

-0

1.3

46.4

Major PPT

62.6

0.29

1.1

54.2

45.8

Minor 5ss

-2.6

3.1

32.5

42.2

Minor BPS

35.2

-1.3

2.7

42.07

43.8

Associated Gene:

Gene:

SCN4A

Ensembl Gene ID:

ENSAPLG00000004906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005205

683340 - 716182

32843