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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_696297_696566_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
696297 - 696566
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGCT
5'SS Class:
major
3'SS Sequence:
CCTCCTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
ATTAAAAACACA
Flanking Amino Acid:
VLERSATVIEFNPGNETEKS
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.7
36.9
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
78.9
0.65
0.7
76.7
25.3
Minor 5ss
36
-1.6
3.5
50.1
40.5
Minor BPS
34.2
-1.2
2.3
49.95
40.3

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843