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Intron Name: Anas_platyrhynchos_platyrhynchos_28_696691_697249_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

696691 - 697249

Intron Length:

559

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTGCCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAG

U12 Branch Point Sequence:

CTGATGTCAGTT

Flanking Amino Acid:

AISVISNAVEELEEAHQKCP

Intron Amino Acid Position:

490

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

75.5

40.4

Major BPS

52.1

0.05

1.6

63.1

44.4

Major PPT

75.8

0.58

0.8

73.1

31.8

Minor 5ss

35.8

-1.6

3.2

51.3

45.1

Minor BPS

-0.8

2.2

51.83

43.5

Associated Gene:

Gene:

SCN4A

Ensembl Gene ID:

ENSAPLG00000004906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005205

683340 - 716182

32843