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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_699290_699585_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
699290 - 699585
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTGCC
5'SS Class:
major
3'SS Sequence:
TTGCTCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
AACTCACCACCC
Flanking Amino Acid:
GLSVLRSFRLLRVFKLAKSW
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
38.7
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
78.5
0.64
0.8
73.3
31.6
Minor 5ss
33
-1.9
3.3
41.5
40.3
Minor BPS
38.9
-0.8
2.1
48.49
40.7

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843