Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_699943_702758_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

699943 - 702758

Intron Length:

2816

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTGTCCCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

GATGTCATCACT

Flanking Amino Acid:

MMVMVIGNLVVLNLFLALLL

Intron Amino Acid Position:

747

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

0.65

1.1

77.4

37.3

Major PPT

79.5

0.66

0.8

70.6

36.2

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

46.4

-0.2

2.1

66.36

Associated Gene:

Gene:

SCN4A

Ensembl Gene ID:

ENSAPLG00000004906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005205

683340 - 716182

32843