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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_703200_707374_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
703200 - 707374
Intron Length:
4175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
TCCTCTTTACAG
Flanking Amino Acid:
SDTEDATVRKNPLSSDNASS
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
84.7
0.78
0.7
79
26.7
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
50.5
-0.1
1.8
55.63
46

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843