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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_707505_707773_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
707505 - 707773
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCATTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTGTCCCCATTC
Flanking Amino Acid:
SNEPEECFTEACVKRFPCLY
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
73.4
0.53
0.8
64.8
35.3
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
44
-0.4
2
54.98
43.6

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843