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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_709679_709918_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
709679 - 709918
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTCTCTCCATG
Flanking Amino Acid:
RALSRFEGMRVVVNALLGAI
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
68.7
37.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79
0.65
0.8
73.8
30.1
Minor 5ss
32.1
-2
3.3
35.7
41.2
Minor BPS
47.7
-0.3
2
60.48
41.9

Associated Gene:

Gene:
SCN4A
Ensembl Gene ID:
ENSAPLG00000004906
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005205
683340 - 716182
32843