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Intron Name: Anas_platyrhynchos_platyrhynchos_28_713589_714288_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

713589 - 714288

Intron Length:

700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTACGCTGG

5'SS Class:

major

3'SS Sequence:

GCCCCCACGGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCGTTAC

U12 Branch Point Sequence:

CCATCGTTACCC

Flanking Amino Acid:

KPQKPIPRPSNKFQGMVFDF

Intron Amino Acid Position:

1280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.2

52.1

47.3

Major BPS

58.9

0.22

1.3

51.3

43.9

Major PPT

56.6

0.15

50.6

32.6

Minor 5ss

42.7

-0.8

3.1

55.6

48.6

Minor BPS

47.4

-0.2

2.3

58.37

46.6

Associated Gene:

Gene:

SCN4A

Ensembl Gene ID:

ENSAPLG00000004906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005205

683340 - 716182

32843